SNP Profiles of RB 37   View Data

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 Key

 1234567891011121314
_Input profile
GGGGAACCACGGGGCCCCAGGGAATTAA
1._RB_37_[BRA]
GGGGAACCACGGGGCCCCAGGGAATTAA
2._GC-01-043-2-20
GGGGAACCACGGGGCCCCAGGGAATTAA
3._GC-01-043-2-20
GGGGAACCACGGGGCCCCAGGGAATTAA
4._GC-01-043-2-20
GGGGAACCACGGGGCCCCAGGGAATTAA
5._GC-01-043-2-20
GGGGAACCACGGGGCCCCAGGGAATTAA
6._GC-01-043-2-20
GGGGAACCACGGGGCCCCAGGGAATTAA
7._GC-01-043-2-20
GGGGAACCACGGGGCCCCAGGGAATTAA
8._GC-01-043-2-20
GGGGAACCACGGGGCCCCAGGGAATTAA
9._GC-01-043-2-20
GGGGAACCACGGGGCCCCAGGGAATTAA
10._RB_37_[BRA]
GGGGAACCACGGGGCCCCAGGGAATTAA
11._RB_37_[BRA]
GGGGAACCACGGGGCCCCAGGGAATTAA
12._RB_37_[BRA]
GGGGAACCACGGGGCCCCAGGGAATTAA
13._RB_37_[BRA]
GGGGAACCACGGGGCCCCAGGGAATTAA
14._RB_37_[BRA]
GGGGAACCACGGGGCCCCAGGGAATTAA
15._RB_37_[BRA]
GGGGAACCACGGGGCCCCAGGGAATTAA
16._RB_37_[BRA]
GGGGAACCACGGGGCCCCAGGGAATTAA
17._GC-01-043-2-20
GGGGAACCACGGGGCCCCAGGGAATTAA
18._RB_37_[BRA]
GGGGAACCACGGGGCCCCAGGGAATTAA
19._GC-01-043-2-20
GGGGAACCACGGGGCCCCAGGGAATTAA
20._GC-01-043-2-20
GGGGAACCACGGGGCCCCAGGGAACCAA
21._RB_37_[BRA]
GGGGAACCACGGGGCCCCAGGGAACCAA
22._RB_37_[BRA]
GGGGAACCCCGGGGCCACAA_AACTAA
23._RUQ_1705
GGGGAA_CCGG__AA____AA
24._RB_37_[BRA]
GGGGAACCCCGG_CCAC_GGAACTAA
25._RUQ_135
GGGGAACCCCGGGGCCACAAGGAACTAA
26._GC-01-43-2-20
CCCC_GGACCGCC_CC_GGAAAAAA
27._GC-01-43-2-20
CCCC_GGACCGCC_CC_GGAAAAAA
 1516171819202122232425262728
_Input profile
GGCCTTGGCCAAGGTTTTGGAACCAACC
1._RB_37_[BRA]
GGCCTTGGCCAAGGTTTTGGAACCAACC
2._GC-01-043-2-20
GGCCTTGGCCAAGGTTTTGGAACCAACC
3._GC-01-043-2-20
GGCCTTGGCCAAGGTTTTGGAACCAACC
4._GC-01-043-2-20
GGCCTTGGCCAAGGTTTTGGAACCAACC
5._GC-01-043-2-20
GGCCTTGGCCAAGGTTTTGGAACCAACC
6._GC-01-043-2-20
GGCCTTGGCCAAGGTTTTGGAACCAACC
7._GC-01-043-2-20
GGCCTTGGCCAAGGTTTTGGAACCAACC
8._GC-01-043-2-20
GGCCTTGGCCAAGGTTTTGGAACCAACC
9._GC-01-043-2-20
GGCCTTGGCCAAGGTTTTGGAACCAACC
10._RB_37_[BRA]
GGCCTTGGCCAAGGTTTTGGAACCAACC
11._RB_37_[BRA]
GGCCTTGGCCAAGGTTTTGGAACCAACC
12._RB_37_[BRA]
GGCCTTGGCCAAGGTTTTGGAACCAACC
13._RB_37_[BRA]
GGCCTTGGCCAAGGTTTTGGAACCAACC
14._RB_37_[BRA]
GGCCTTGGCCAAGGTTTTGGAACCAACC
15._RB_37_[BRA]
GGCCTTGGCCAAGGTTTTGGAACCAACC
16._RB_37_[BRA]
GGCCTTGGCCAAGGTTTTGGAACCAACC
17._GC-01-043-2-20
GGCCTTGGCCAAGGTTTTGGAACCAACC
18._RB_37_[BRA]
GG_TTGGCCAAGGTTTTGGAACCAACC
19._GC-01-043-2-20
GG_TTGGCCAAGGTTTTGGAACCAACC
20._GC-01-043-2-20
GG_TTGGCCAAGGTTTTGGAACCAACC
21._RB_37_[BRA]
GG_TTGGCCAAGGTTTTGGAACCAACC
22._RB_37_[BRA]
_CC_GGACAAGGTTCTCGAACCAACT
23._RUQ_1705
____AC_______AA_
24._RB_37_[BRA]
_CCCCGGACAAGGTTCTCGAACCAACT
25._RUQ_135
GGCCCCGGACAAGGCTCTCGAACCAACT
26._GC-01-43-2-20
CCCCAACCCCAAGGAAAAGGAAGGAAGG
27._GC-01-43-2-20
CCCCAACCCCAAGGAAAAGGAAGGAAGG
 293031323334353637383940  
_Input profile
GGAATTCTGGTTAACTCCCCAACCX_XX_X
1._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
2._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
3._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
4._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
5._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
6._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
7._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
8._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
9._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
10._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
11._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
12._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
13._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
14._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
15._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
16._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
17._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
18._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
19._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
20._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
21._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
22._RB_37_[BRA]
GGAA_TTGGTTAACCCTCCAACCX_XX_X
23._RUQ_1705
GG_TT_GG____CC__X_XX_X
24._RB_37_[BRA]
GGAA_TTGGTTAACCCCCCAA_X_XX_X
25._RUQ_135
GGAACTCTGGTTAACCCCCCAGCCX_XX_X
26._GC-01-43-2-20
GGAA__CCAAAAAGGGGGAAGGX_XX_X
27._GC-01-43-2-20
GGAA__CCAA_AGGGGGAAGGX_XX_X

Input profile: RB_37_[BRA]

 
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Mars Center for Cocoa Science, Brazil
Location: 1216 14 > F
 Dapeng Zhang, 2016

1._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 9 > FP
 Dapeng Zhang, 2016

2._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

4._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

6._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

10._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 11 > F
 Dapeng Zhang, 2016

11._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 15
 Dapeng Zhang, 2016

12._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 13
 Dapeng Zhang, 2016

13._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 10
 Dapeng Zhang, 2016

14._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 8
 Dapeng Zhang, 2016

15._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 6
 Dapeng Zhang, 2016

16._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

17._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

18._RB_37_[BRA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 16
 Dapeng Zhang, 2016

19._RB_37_[BRA] GC-01-043-2-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

20._RB_37_[BRA] GC-01-043-2-20

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

21._RB_37_[BRA]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 2 > FP
 Dapeng Zhang, 2016

22._RB_37_[BRA]

84.7 %
36 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

23._RB_37_[BRA] RUQ_1705

84.6 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

24._RB_37_[BRA]

84.3 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

25._RB_37_[BRA] RUQ_135

82.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

26._RB_37_[BRA] GC-01-43-2-20

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 11 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

27._RB_37_[BRA] GC-01-43-2-20

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP872 2TcSNP723 3TcSNP645 4TcSNP619 5TcSNP591
6TcSNP577 7TcSNP560 8TcSNP534 9TcSNP529 10TcSNP469
11TcSNP429 12TcSNP372 13TcSNP242 14TcSNP230 15TcSNP226
16TcSNP193 17TcSNP151 18TcSNP150 19TcSNP144 20TcSNP32
21TcSNP25 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520